SNP Report
Basic Infomation
| Name | rs3815362 dbSNP |
|---|---|
| Location | chr:11,64033555 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231740 | 0.80[GIH][hapmap];0.92[LWK][hapmap] |
| rs11231741 | 1.00[CEU][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11231749 | 1.00[CEU][hapmap] |
| rs1123251 | 0.84[JPT][hapmap] |
| rs12366035 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1317494 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28395882 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4930152 | 0.96[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4980525 | 0.84[JPT][hapmap] |
| rs56057146 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs599908 | 0.95[EUR][1000 genomes] |
| rs627055 | 0.84[JPT][hapmap] |
| rs7125217 | 0.80[AMR][1000 genomes] |
| rs72922019 | 0.80[AMR][1000 genomes] |
| rs72922077 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs731703 | 1.00[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs7943988 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9787810 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GPR137 | Proximal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
| ENSG00000207024 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| PLCB3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014