SNP Report
Name | rs9787810   dbSNP |
---|---|
Location | chr:11,64085298 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11231740 | 0.80[GIH][hapmap];0.82[LWK][hapmap] |
rs11231741 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs11231746 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11231749 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1317494 | 1.00[CEU][hapmap];0.83[CHB][hapmap] |
rs28364831 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3815362 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap] |
rs4930152 | 0.96[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.84[TSI][hapmap] |
rs56057146 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs66493355 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs7122759 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs72922077 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs72924108 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs731703 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
PRDX5 | Proximal transcriptional regulation |
TRMT112 | Proximal transcriptional regulation |
SLK | Distal transcriptional regulation |
DUSP5 | Distal transcriptional regulation |
THRAP3 | Distal transcriptional regulation |
ENSG00000207501 | Distal transcriptional regulation |
S100A10 | Distal transcriptional regulation |
ENSG00000224467 | Distal transcriptional regulation |
TANK | Distal transcriptional regulation |
ID1 | Distal transcriptional regulation |
GTF2E1 | Distal transcriptional regulation |
RABL3 | Distal transcriptional regulation |
SNX3 | Distal transcriptional regulation |
CNTRL | Distal transcriptional regulation |
MACROD1 | Distal transcriptional regulation |
STIP1 | Distal transcriptional regulation |
FERMT3 | Distal transcriptional regulation |
PPP1R14B | Distal transcriptional regulation |
ENSG00000256940 | Distal transcriptional regulation |
ENSG00000257086 | Distal transcriptional regulation |
GPR137 | Distal transcriptional regulation |
BAD | Distal transcriptional regulation |
SF1 | Distal transcriptional regulation |
ENSG00000269038 | Distal transcriptional regulation |
CCDC88B | Distal transcriptional regulation |
RPS6KA4 | Distal transcriptional regulation |
PLCB3 | Distal transcriptional regulation |
AHNAK | Distal transcriptional regulation |
MAP4K2 | Distal transcriptional regulation |
ARHGEF19 | Distal transcriptional regulation |
CANX | Distal transcriptional regulation |
HMGB3P22 | Distal transcriptional regulation |
ZNF195 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014