SNP Report
Basic Infomation
| Name | rs9787810 dbSNP |
|---|---|
| Location | chr:11,64085298 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231740 | 0.80[GIH][hapmap];0.82[LWK][hapmap] |
| rs11231741 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11231746 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11231749 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1317494 | 1.00[CEU][hapmap];0.83[CHB][hapmap] |
| rs28364831 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3815362 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap] |
| rs4930152 | 0.96[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.84[TSI][hapmap] |
| rs56057146 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs66493355 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7122759 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72922077 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72924108 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs731703 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRDX5 | Proximal transcriptional regulation |
| TRMT112 | Proximal transcriptional regulation |
| SLK | Distal transcriptional regulation |
| DUSP5 | Distal transcriptional regulation |
| THRAP3 | Distal transcriptional regulation |
| ENSG00000207501 | Distal transcriptional regulation |
| S100A10 | Distal transcriptional regulation |
| ENSG00000224467 | Distal transcriptional regulation |
| TANK | Distal transcriptional regulation |
| ID1 | Distal transcriptional regulation |
| GTF2E1 | Distal transcriptional regulation |
| RABL3 | Distal transcriptional regulation |
| SNX3 | Distal transcriptional regulation |
| CNTRL | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| FERMT3 | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| ENSG00000257086 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| PLCB3 | Distal transcriptional regulation |
| AHNAK | Distal transcriptional regulation |
| MAP4K2 | Distal transcriptional regulation |
| ARHGEF19 | Distal transcriptional regulation |
| CANX | Distal transcriptional regulation |
| HMGB3P22 | Distal transcriptional regulation |
| ZNF195 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014