SNP Report
Basic Infomation
| Name | rs11231749 dbSNP |
|---|---|
| Location | chr:11,64095178 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231741 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11231746 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11231776 | 0.81[CHB][hapmap] |
| rs1317494 | 1.00[CEU][hapmap];0.84[CHB][hapmap] |
| rs28364831 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3815362 | 1.00[CEU][hapmap] |
| rs4930152 | 0.96[CEU][hapmap] |
| rs56057146 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs578386 | 0.80[EUR][1000 genomes] |
| rs66493355 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7122759 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72922077 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72924108 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs731703 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9787810 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GPR137 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014