SNP Report
Basic Infomation
| Name | rs4980525 dbSNP |
|---|---|
| Location | chr:11,63948354 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897474 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11231704 | 0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11231741 | 0.84[JPT][hapmap] |
| rs1123251 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12787945 | 0.85[CEU][hapmap] |
| rs1317494 | 1.00[JPT][hapmap] |
| rs2186643 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs2236647 | 0.89[CEU][hapmap] |
| rs2236648 | 0.85[CEU][hapmap] |
| rs2325786 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2875748 | 0.81[CEU][hapmap] |
| rs3815362 | 0.84[JPT][hapmap] |
| rs4930152 | 0.84[CHB][hapmap];0.84[JPT][hapmap] |
| rs4980524 | 0.82[CEU][hapmap] |
| rs55970722 | 0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs627055 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7944314 | 1.00[YRI][hapmap] |
| rs882147 | 0.82[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| STIP1 | Proximal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014