SNP Report
Basic Infomation
| Name | rs2845597 dbSNP |
|---|---|
| Location | chr:11,63954370 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11231722 | 0.92[AFR][1000 genomes] |
| rs11601522 | 0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11603042 | 0.83[CHB][hapmap];0.90[CHD][hapmap];0.87[MEX][hapmap] |
| rs11603192 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11603384 | 0.92[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11603538 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11604782 | 0.92[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12418535 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12420070 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12787945 | 0.93[ASW][hapmap];0.80[CHB][hapmap];0.90[CHD][hapmap];0.95[LWK][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs1860368 | 0.92[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2236648 | 0.93[ASW][hapmap];0.80[CHB][hapmap];0.85[CHD][hapmap];0.95[LWK][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs2282491 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2282492 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2429455 | 0.87[ASW][hapmap];0.92[CEU][hapmap];0.92[CHD][hapmap];0.87[JPT][hapmap];0.84[LWK][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.88[YRI][hapmap];0.84[EUR][1000 genomes] |
| rs2515241 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3888316 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4980508 | 0.80[CHB][hapmap];0.88[CHD][hapmap] |
| rs4980524 | 0.80[CHB][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs594942 | 0.93[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.87[MEX][hapmap];0.88[YRI][hapmap] |
| rs604203 | 0.92[CHD][hapmap];0.80[JPT][hapmap] |
| rs60452247 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6591836 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7102177 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7111753 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7112960 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7938819 | 0.80[CHB][hapmap] |
| rs882147 | 0.80[CHB][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MACROD1 | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| MARK2 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
| RCOR2 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| FERMT3 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| PPP1R14B | Distal transcriptional regulation |
| ENSG00000256940 | Distal transcriptional regulation |
| PLCB3 | Distal transcriptional regulation |
| TRPT1 | Distal transcriptional regulation |
| NUDT22 | Distal transcriptional regulation |
| DNAJC4 | Distal transcriptional regulation |
| ENSG00000256116 | Distal transcriptional regulation |
| VEGFB | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014