SNP Report
Name | rs594942   dbSNP |
---|---|
Location | chr:11,64006292 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11231727 | 0.81[CHD][hapmap] |
rs11601522 | 0.82[EUR][1000 genomes] |
rs11603042 | 0.88[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs11603192 | 0.94[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.83[MEX][hapmap] |
rs11603384 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes] |
rs11603538 | 0.88[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes] |
rs11604782 | 0.88[CEU][hapmap];0.89[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes] |
rs12418535 | 0.94[CHB][hapmap];0.88[JPT][hapmap] |
rs12787945 | 0.87[ASW][hapmap];0.87[YRI][hapmap] |
rs1860368 | 0.81[ASW][hapmap];0.96[CEU][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.90[TSI][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2236648 | 0.87[ASW][hapmap];0.88[YRI][hapmap] |
rs2282492 | 0.94[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap] |
rs2429455 | 0.93[ASW][hapmap];0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs2515241 | 0.87[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.87[YRI][hapmap] |
rs2845597 | 0.93[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.87[MEX][hapmap];0.88[YRI][hapmap] |
rs3741404 | 0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4980524 | 0.88[YRI][hapmap] |
rs595880 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs604203 | 0.83[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap] |
rs7112960 | 0.94[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.87[MEX][hapmap] |
rs882147 | 0.88[YRI][hapmap] |
Symbol | Regulation type |
---|---|
FKBP2 | Proximal transcriptional regulation |
ENSG00000256116 | Proximal transcriptional regulation |
ENSG00000236935 | Distal transcriptional regulation |
MACROD1 | Distal transcriptional regulation |
GPR137 | Distal transcriptional regulation |
BAD | Distal transcriptional regulation |
TEX40 | Distal transcriptional regulation |
ESRRA | Distal transcriptional regulation |
KCNK4 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014