SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 6)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs2159370	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2236647	0.81[CHD][hapmap];0.85[JPT][hapmap]
rs2875748	0.85[JPT][hapmap]
rs3741403	1.00[CEU][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs594942	0.81[CHD][hapmap]
rs604203	0.85[CEU][hapmap];0.92[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000256940	Proximal transcriptional regulation
CCDC88B	Distal transcriptional regulation
ENSG00000215769	Distal transcriptional regulation
TEX40	Distal transcriptional regulation
ESRRA	Distal transcriptional regulation
HNRNPK	Distal transcriptional regulation
RMI1	Distal transcriptional regulation
STIP1	Distal transcriptional regulation
KCNK4	Distal transcriptional regulation
TRMT112	Distal transcriptional regulation
PRDX5	Distal transcriptional regulation
GPR137	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 6)