SNP Report
Basic Infomation
| Name | rs3741404 dbSNP |
|---|---|
| Location | chr:11,63999240 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1058735 | 0.83[CHB][hapmap] |
| rs11601522 | 0.81[EUR][1000 genomes] |
| rs11603042 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11603384 | 0.88[YRI][hapmap];0.83[EUR][1000 genomes] |
| rs11604782 | 0.88[YRI][hapmap];0.83[EUR][1000 genomes] |
| rs11605738 | 0.82[CHB][hapmap] |
| rs12794145 | 0.82[CHB][hapmap] |
| rs1860368 | 0.83[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2001003 | 0.82[CHB][hapmap] |
| rs2070765 | 0.82[CHB][hapmap] |
| rs2429455 | 0.83[CEU][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs594942 | 0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs595880 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs604203 | 0.94[CHB][hapmap];0.87[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNAJC4 | Proximal transcriptional regulation |
| VEGFB | Proximal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
| ENSG00000256116 | RNA binding protein mediated regulation |
| DNAJC4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014