SNP Report
Basic Infomation
| Name | rs2001003 dbSNP |
|---|---|
| Location | chr:11,64018687 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 42)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1058735 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1059440 | 1.00[ASW][hapmap];0.93[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs11600867 | 0.82[YRI][hapmap] |
| rs11601024 | 0.87[AFR][1000 genomes] |
| rs11602181 | 1.00[ASW][hapmap];0.86[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap] |
| rs11603042 | 0.82[CHB][hapmap] |
| rs11603212 | 1.00[ASW][hapmap];0.86[CEU][hapmap];0.93[CHB][hapmap];0.87[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap] |
| rs11605738 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11607007 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11607144 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs11607165 | 1.00[ASW][hapmap];0.93[CEU][hapmap];0.93[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.91[LWK][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs12418035 | 0.90[MEX][hapmap];0.83[TSI][hapmap] |
| rs12575642 | 1.00[ASW][hapmap];0.86[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.82[YRI][hapmap] |
| rs12787852 | 0.82[AFR][1000 genomes] |
| rs12794145 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12798333 | 0.82[CEU][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12802950 | 0.81[AMR][1000 genomes] |
| rs2015226 | 0.86[CEU][hapmap];0.93[CHB][hapmap];0.82[YRI][hapmap] |
| rs2070765 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2282490 | 1.00[ASW][hapmap];0.93[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.91[LWK][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs2286614 | 1.00[ASW][hapmap] |
| rs28395875 | 0.82[EUR][1000 genomes] |
| rs34358026 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs35090903 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs35458188 | 0.87[AFR][1000 genomes] |
| rs35524387 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs35858916 | 0.87[AFR][1000 genomes] |
| rs3741404 | 0.82[CHB][hapmap] |
| rs3802933 | 0.93[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes] |
| rs3824854 | 0.86[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap] |
| rs604203 | 0.87[CHB][hapmap] |
| rs67546972 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs7102327 | 0.86[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap] |
| rs7111278 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs71479474 | 0.84[AFR][1000 genomes] |
| rs72920332 | 0.87[AFR][1000 genomes] |
| rs72922039 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7478730 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7938380 | 0.82[EUR][1000 genomes] |
| rs7939107 | 0.80[EUR][1000 genomes] |
| rs7939784 | 1.00[ASW][hapmap];0.86[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.91[LWK][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap] |
| rs882146 | 1.00[ASW][hapmap];0.93[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.84[LWK][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLCB3 | Proximal transcriptional regulation |
| PPP1R14B | Proximal transcriptional regulation |
| ENSG00000257086 | Proximal transcriptional regulation |
| RPA3 | Distal transcriptional regulation |
| FKBP2 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| RPS6KA4 | Distal transcriptional regulation |
| MTA2 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| NEAT1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 10)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014