SNP Report
Basic Infomation
| Name | rs72922039 dbSNP |
|---|---|
| Location | chr:11,64013116 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1058735 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1059440 | 0.89[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs11601024 | 0.87[AFR][1000 genomes] |
| rs11605738 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11607007 | 0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11607144 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs11607165 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs12787852 | 0.82[AFR][1000 genomes] |
| rs12794145 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12798333 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12802950 | 0.81[AMR][1000 genomes] |
| rs2001003 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2070765 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2282490 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs28395875 | 0.82[EUR][1000 genomes] |
| rs34358026 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs35090903 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs35458188 | 0.87[AFR][1000 genomes] |
| rs35524387 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs35858916 | 0.87[AFR][1000 genomes] |
| rs3802933 | 0.84[AMR][1000 genomes] |
| rs67546972 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs7111278 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs71479474 | 0.84[AFR][1000 genomes] |
| rs72920332 | 0.87[AFR][1000 genomes] |
| rs7478730 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7938380 | 0.82[EUR][1000 genomes] |
| rs7939107 | 0.81[EUR][1000 genomes] |
| rs882146 | 0.82[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PPP1R14B | Proximal transcriptional regulation |
| ENSG00000256940 | Proximal transcriptional regulation |
| RPS16 | Distal transcriptional regulation |
| TRMT112 | Distal transcriptional regulation |
| PRDX5 | Distal transcriptional regulation |
| MIR3614 | Distal transcriptional regulation |
| TRIM25 | Distal transcriptional regulation |
| TEX40 | Distal transcriptional regulation |
| ESRRA | Distal transcriptional regulation |
| GPR137 | Distal transcriptional regulation |
| TMEM179B | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| KCNK4 | Distal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| ENSG00000236935 | Distal transcriptional regulation |
| ENSG00000257069 | Distal transcriptional regulation |
| BAD | Distal transcriptional regulation |
| PPP1R14B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014