SNP Report

Basic Infomation

Name	rs1058735 dbSNP
Location	chr:11,64000410
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 54)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1059440	0.93[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11231701	0.86[EUR][1000 genomes]
rs11600867	0.85[YRI][hapmap]
rs11601024	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11601577	0.90[EUR][1000 genomes]
rs11602181	0.86[CEU][hapmap];0.87[CHB][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs11603042	0.82[CHB][hapmap]
rs11603212	0.86[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.90[EUR][1000 genomes]
rs11605738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11606544	0.86[EUR][1000 genomes]
rs11607007	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11607144	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11607165	0.93[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12574258	0.85[EUR][1000 genomes]
rs12575642	0.86[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12787852	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12794145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12797120	0.86[EUR][1000 genomes]
rs12798333	0.82[CEU][hapmap];0.86[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12802950	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2001003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2015226	0.87[CEU][hapmap];0.94[CHB][hapmap];0.91[YRI][hapmap];0.86[EUR][1000 genomes]
rs2070765	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2282490	0.93[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2875749	0.86[EUR][1000 genomes]
rs34089806	0.83[EUR][1000 genomes]
rs34113693	0.86[EUR][1000 genomes]
rs34358026	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35090903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35095324	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35458188	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35524387	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35858916	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs3741404	0.83[CHB][hapmap]
rs3802933	0.93[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3824854	0.86[CEU][hapmap];0.87[CHB][hapmap];0.84[EUR][1000 genomes]
rs58632573	0.86[EUR][1000 genomes]
rs604203	0.87[CHB][hapmap]
rs6591837	0.92[EUR][1000 genomes]
rs66648159	0.86[EUR][1000 genomes]
rs67546972	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7102327	0.87[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.84[YRI][hapmap];0.85[EUR][1000 genomes]
rs7111278	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7112277	0.93[EUR][1000 genomes]
rs7130030	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs71479474	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72918475	0.82[EUR][1000 genomes]
rs72920332	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72922039	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7478730	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7939784	0.86[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.91[YRI][hapmap];0.86[EUR][1000 genomes]
rs7944061	0.86[EUR][1000 genomes]
rs7952318	0.82[EUR][1000 genomes]
rs882146	0.93[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
DNAJC4	Proximal transcriptional regulation
VEGFB	Proximal transcriptional regulation
MACROD1	Distal transcriptional regulation
RPS6KA4	Distal transcriptional regulation
ESRRA	Distal transcriptional regulation
GPR137	Distal transcriptional regulation
ENSG00000256116	RNA binding protein mediated regulation
DNAJC4	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)