SNP Report
Basic Infomation
| Name | rs35524387 dbSNP |
|---|---|
| Location | chr:11,63984911 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 52)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1058735 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1059440 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11231701 | 0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11600867 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11601024 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11601577 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11602181 | 0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11603212 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11605738 | 0.87[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs11606544 | 0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11607007 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11607144 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11607165 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12574258 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12575642 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12787852 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12794145 | 0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12797120 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12798333 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12802950 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2001003 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs2015226 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2070765 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2154986 | 0.80[EUR][1000 genomes] |
| rs2282490 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2875749 | 0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs34089806 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs34113693 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs34358026 | 0.86[AMR][1000 genomes] |
| rs35090903 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs35095324 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs35458188 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs35858916 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3802933 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3824854 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs58632573 | 0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6591837 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs66648159 | 0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs67546972 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7102327 | 0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7111278 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs7112277 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7130030 | 0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs71479474 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72918475 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs72920332 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72922039 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs7478730 | 0.87[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs7939784 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7944061 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7952318 | 0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs882146 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FERMT3 | Proximal transcriptional regulation |
| CCDC88B | Distal transcriptional regulation |
| FERMT3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014