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rVarBase
SNP Report
Basic Infomation
Name
rs614397  
dbSNP
Location
chr:11,63883985
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11603192
0.81[YRI][hapmap]
rs12418535
0.88[YRI][hapmap]
rs2282491
0.88[YRI][hapmap]
rs2282492
0.88[YRI][hapmap]
rs35786213
0.82[ASN][1000 genomes]
rs3751120
0.83[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs56241103
0.80[ASN][1000 genomes]
rs7112960
0.88[YRI][hapmap]
rSNP related genes
Symbol
Regulation type
OTUB1
Distal transcriptional regulation
MACROD1
RNA binding protein mediated regulation
FLRT1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
eQTL related gene
Source
NAA40
SCAN
BATF2
SCAN
SCGB1A1
SCAN
FKBP2
SCAN