SNP Report

Basic Infomation

Name	rs9465925 dbSNP
Location	chr:6,20882544
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1004172	0.86[TSI][hapmap]
rs10806923	0.89[CEU][hapmap];0.86[CHB][hapmap];0.80[CHD][hapmap];0.89[GIH][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap]
rs10946405	0.93[CHB][hapmap];0.84[ASN][1000 genomes]
rs10946406	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs10946415	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10946416	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12190376	0.86[CHB][hapmap]
rs12194583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215519	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs12662176	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2745929	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs4077404	0.94[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4351239	0.86[CHB][hapmap]
rs4510656	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs4546483	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4612156	0.81[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.91[ASN][1000 genomes]
rs4626408	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4644038	0.86[CHB][hapmap]
rs4645410	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4710944	0.81[GIH][hapmap]
rs4710945	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs4710946	0.86[CHB][hapmap]
rs4710958	0.86[GIH][hapmap]
rs4712539	0.86[CHB][hapmap]
rs4712540	0.86[CHB][hapmap]
rs4712561	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4712562	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4712564	1.00[CEU][hapmap];0.91[GIH][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs4712572	0.83[TSI][hapmap]
rs60702402	0.80[ASN][1000 genomes]
rs6910326	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs6913323	0.81[CEU][hapmap];0.93[CHB][hapmap];0.92[ASN][1000 genomes]
rs6918643	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72657618	0.99[EUR][1000 genomes]
rs7453352	0.83[CHB][hapmap]
rs7747724	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs7765413	0.86[CHB][hapmap]
rs9348453	0.83[TSI][hapmap]
rs9350301	0.83[TSI][hapmap]
rs9356756	0.86[CHB][hapmap];0.85[CHD][hapmap];0.83[ASN][1000 genomes]
rs9368262	0.83[TSI][hapmap]
rs9465877	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs9465880	0.86[CHB][hapmap];0.80[CHD][hapmap]
rs9465888	0.86[CHB][hapmap]
rs9465889	0.86[CHB][hapmap]
rs9465890	0.93[CHB][hapmap];0.84[GIH][hapmap];0.81[ASN][1000 genomes]
rs9465895	0.94[CEU][hapmap];0.93[CHB][hapmap];0.94[GIH][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9465912	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9465923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)