SNP Report

Basic Infomation

Name	rs9348453 dbSNP
Location	chr:6,21006662
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 30)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1004172	0.94[CEU][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10946415	0.83[TSI][hapmap]
rs10946424	0.90[EUR][1000 genomes]
rs12192642	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12193382	0.88[EUR][1000 genomes]
rs12197923	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1997685	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4077404	0.80[TSI][hapmap]
rs4710959	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs4710961	0.82[CHD][hapmap]
rs4712564	0.85[TSI][hapmap]
rs4712570	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs4712572	0.94[CEU][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4712575	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73379534	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7453577	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7738201	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs9348452	0.87[EUR][1000 genomes]
rs9350301	0.94[CEU][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs9350302	0.87[EUR][1000 genomes]
rs9350310	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9356759	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9358382	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9358383	0.83[CHB][hapmap];0.91[CHD][hapmap];0.86[TSI][hapmap];0.84[ASN][1000 genomes]
rs9358385	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9368260	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9368261	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9368262	0.94[CEU][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9368263	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9465925	0.83[TSI][hapmap]

rSNP related genes

Symbol	Regulation type
SOX4	Distal transcriptional regulation
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)