SNP Report
Name | rs9348453   dbSNP |
---|---|
Location | chr:6,21006662 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1004172 | 0.94[CEU][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs10946415 | 0.83[TSI][hapmap] |
rs10946424 | 0.90[EUR][1000 genomes] |
rs12192642 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs12193382 | 0.88[EUR][1000 genomes] |
rs12197923 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1997685 | 0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs4077404 | 0.80[TSI][hapmap] |
rs4710959 | 0.94[CEU][hapmap];0.86[EUR][1000 genomes] |
rs4710961 | 0.82[CHD][hapmap] |
rs4712564 | 0.85[TSI][hapmap] |
rs4712570 | 0.94[CEU][hapmap];0.85[EUR][1000 genomes] |
rs4712572 | 0.94[CEU][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs4712575 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs73379534 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs7453577 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs7738201 | 0.81[CEU][hapmap];0.86[EUR][1000 genomes] |
rs9348452 | 0.87[EUR][1000 genomes] |
rs9350301 | 0.94[CEU][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes] |
rs9350302 | 0.87[EUR][1000 genomes] |
rs9350310 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs9356759 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs9358382 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs9358383 | 0.83[CHB][hapmap];0.91[CHD][hapmap];0.86[TSI][hapmap];0.84[ASN][1000 genomes] |
rs9358385 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs9368260 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9368261 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs9368262 | 0.94[CEU][hapmap];0.88[GIH][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs9368263 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs9465925 | 0.83[TSI][hapmap] |
Symbol | Regulation type |
---|---|
SOX4 | Distal transcriptional regulation |
CDKAL1 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
MIR296 | seeQTL |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014