SNP Report

Basic Infomation

Name	rs4712564 dbSNP
Location	chr:6,20920123
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 47)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1004172	0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs10806923	0.89[CEU][hapmap];0.80[GIH][hapmap]
rs10946415	1.00[CEU][hapmap];0.82[GIH][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs10946416	0.81[CEU][hapmap]
rs10946424	0.80[EUR][1000 genomes]
rs12194583	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12197923	0.81[EUR][1000 genomes]
rs12215519	0.94[CEU][hapmap]
rs1997685	0.84[EUR][1000 genomes]
rs4077404	0.94[CEU][hapmap];0.88[GIH][hapmap];0.94[TSI][hapmap];0.92[EUR][1000 genomes]
rs4546483	0.81[CEU][hapmap]
rs4612156	0.81[CEU][hapmap]
rs4626408	0.92[EUR][1000 genomes]
rs4645410	1.00[CEU][hapmap];0.80[GIH][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs4710958	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4710959	0.83[EUR][1000 genomes]
rs4712561	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4712562	0.93[EUR][1000 genomes]
rs4712570	0.82[EUR][1000 genomes]
rs4712572	0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs4712575	0.82[EUR][1000 genomes]
rs6913323	0.81[CEU][hapmap]
rs6918643	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs72657618	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72657619	0.83[ASN][1000 genomes]
rs73379534	0.81[EUR][1000 genomes]
rs7453577	0.81[EUR][1000 genomes]
rs7738201	0.84[EUR][1000 genomes]
rs9348452	0.82[EUR][1000 genomes]
rs9348453	0.85[TSI][hapmap]
rs9350301	0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs9350302	0.82[EUR][1000 genomes]
rs9350309	0.84[JPT][hapmap]
rs9358382	0.82[EUR][1000 genomes]
rs9368260	0.83[EUR][1000 genomes]
rs9368261	0.81[EUR][1000 genomes]
rs9368262	0.85[TSI][hapmap]
rs9460564	1.00[YRI][hapmap]
rs9460577	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9460578	0.94[CHB][hapmap];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9460587	1.00[YRI][hapmap]
rs9465895	0.94[CEU][hapmap];0.85[GIH][hapmap];0.84[TSI][hapmap]
rs9465901	1.00[YRI][hapmap]
rs9465912	0.81[EUR][1000 genomes]
rs9465923	1.00[CEU][hapmap];0.85[GIH][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs9465925	1.00[CEU][hapmap];0.91[GIH][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs9465934	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)