SNP Report

Basic Infomation

Name	rs4645410 dbSNP
Location	chr:6,20873848
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 52)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1004172	0.81[TSI][hapmap]
rs10806923	0.89[CEU][hapmap];0.93[CHB][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.84[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10946405	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10946406	0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10946415	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10946416	0.81[CEU][hapmap];0.93[CHB][hapmap];0.92[ASN][1000 genomes]
rs12190376	0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12194583	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12215519	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs12662176	0.84[ASN][1000 genomes]
rs13214325	0.83[ASN][1000 genomes]
rs2745929	0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2819990	0.82[ASN][1000 genomes]
rs34801493	0.83[ASN][1000 genomes]
rs4077404	0.94[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[MKK][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4351239	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4363020	0.85[ASN][1000 genomes]
rs4475313	0.85[ASN][1000 genomes]
rs4510656	0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4546483	0.81[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.92[ASN][1000 genomes]
rs4612156	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4626408	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4644038	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4710944	0.83[GIH][hapmap]
rs4710945	0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs4710946	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4712539	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4712540	0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4712561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712562	0.92[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4712564	1.00[CEU][hapmap];0.80[GIH][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs60702402	0.88[ASN][1000 genomes]
rs6910215	0.83[ASN][1000 genomes]
rs6910326	0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6913323	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6918643	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72657618	0.91[EUR][1000 genomes]
rs7453352	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7747724	0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7765413	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9356756	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9465877	0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9465879	0.85[ASN][1000 genomes]
rs9465880	0.93[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9465883	0.83[ASN][1000 genomes]
rs9465888	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9465889	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9465890	1.00[CHB][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs9465895	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9465912	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9465923	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.83[GIH][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9465925	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SOX4	Distal transcriptional regulation
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)