SNP Report

Basic Infomation

Name	rs9465890 dbSNP
Location	chr:6,20774759
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 56)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10806923	0.93[CHB][hapmap];0.96[CHD][hapmap];0.83[GIH][hapmap];0.91[ASN][1000 genomes]
rs10806925	0.80[YRI][hapmap]
rs10946405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10946406	0.93[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs10946415	1.00[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs10946416	0.93[CHB][hapmap];0.81[ASN][1000 genomes]
rs12190376	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12194583	0.92[CHB][hapmap];0.81[ASN][1000 genomes]
rs12199271	0.86[ASN][1000 genomes]
rs12661606	0.80[YRI][hapmap]
rs13214325	0.96[ASN][1000 genomes]
rs2745929	0.93[CHB][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs2819990	0.90[ASN][1000 genomes]
rs34801493	0.96[ASN][1000 genomes]
rs4077404	1.00[CHB][hapmap];0.80[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4330530	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4351239	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4475313	0.93[ASN][1000 genomes]
rs4510656	0.93[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4546483	0.93[CHB][hapmap];0.81[ASN][1000 genomes]
rs4612156	1.00[CHB][hapmap];0.80[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4626408	0.81[ASN][1000 genomes]
rs4644038	0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4645410	1.00[CHB][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4710944	0.92[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs4710945	0.93[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4710946	0.93[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4712538	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4712539	0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4712540	0.93[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs4712561	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4712562	0.92[CHB][hapmap]
rs57049909	0.92[ASN][1000 genomes]
rs6910215	0.96[ASN][1000 genomes]
rs6910326	0.93[CHB][hapmap];0.87[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs6913323	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs7453352	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7747724	0.93[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7747989	0.80[YRI][hapmap]
rs7765413	0.93[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs9356756	0.93[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs9465874	0.92[GIH][hapmap];1.00[MEX][hapmap]
rs9465875	0.92[GIH][hapmap];0.95[MEX][hapmap]
rs9465877	0.93[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs9465879	0.93[ASN][1000 genomes]
rs9465880	0.93[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs9465883	0.96[ASN][1000 genomes]
rs9465888	0.93[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs9465889	0.93[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs9465895	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs9465897	0.80[YRI][hapmap]
rs9465899	0.80[YRI][hapmap]
rs9465900	0.80[YRI][hapmap]
rs9465912	0.85[ASN][1000 genomes]
rs9465923	0.93[CHB][hapmap];0.81[ASN][1000 genomes]
rs9465925	0.93[CHB][hapmap];0.84[GIH][hapmap];0.81[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000233848	RNA binding protein mediated regulation
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)