SNP Report
Basic Infomation
| Name | rs4710944 dbSNP |
|---|---|
| Location | chr:6,20744727 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10806923 | 0.81[GIH][hapmap] |
| rs10946405 | 0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10946406 | 0.89[GIH][hapmap] |
| rs12197544 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12215519 | 1.00[CHB][hapmap] |
| rs17226450 | 1.00[CHD][hapmap] |
| rs2745929 | 0.84[GIH][hapmap] |
| rs4077404 | 0.84[GIH][hapmap] |
| rs4510656 | 0.89[GIH][hapmap] |
| rs4645410 | 0.83[GIH][hapmap] |
| rs4710945 | 0.87[GIH][hapmap] |
| rs4712538 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4712540 | 0.84[GIH][hapmap] |
| rs6910326 | 0.84[GIH][hapmap] |
| rs7747724 | 0.82[GIH][hapmap] |
| rs9465874 | 0.95[GIH][hapmap];0.94[MEX][hapmap];0.86[AMR][1000 genomes] |
| rs9465875 | 0.95[GIH][hapmap];0.90[MEX][hapmap];0.84[AMR][1000 genomes] |
| rs9465877 | 0.85[GIH][hapmap] |
| rs9465890 | 0.92[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs9465895 | 0.86[GIH][hapmap] |
| rs9465925 | 0.81[GIH][hapmap] |
| rs9942429 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs9942459 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| CST3 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014