SNP Report
Basic Infomation
| Name | rs12215519 dbSNP |
|---|---|
| Location | chr:6,20800635 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10806923 | 0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10946415 | 0.94[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs10946424 | 0.86[ASN][1000 genomes] |
| rs12194583 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs4077404 | 1.00[CEU][hapmap] |
| rs4626408 | 0.80[EUR][1000 genomes] |
| rs4645410 | 0.94[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs4710944 | 1.00[CHB][hapmap] |
| rs4712538 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs4712561 | 0.95[CEU][hapmap] |
| rs4712562 | 0.81[EUR][1000 genomes] |
| rs4712564 | 0.94[CEU][hapmap] |
| rs6918643 | 0.94[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs72657618 | 0.81[EUR][1000 genomes] |
| rs7738201 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs9465895 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs9465912 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs9465923 | 0.94[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs9465925 | 0.94[CEU][hapmap];0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000233848 | RNA binding protein mediated regulation |
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014