SNP Report

Basic Infomation

Name	rs6918643 dbSNP
Location	chr:6,20897656
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 22)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10806923	0.87[CEU][hapmap]
rs10946405	0.81[ASN][1000 genomes]
rs10946415	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10946416	0.98[ASN][1000 genomes]
rs12194583	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12215519	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs12662176	0.89[ASN][1000 genomes]
rs4077404	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4546483	0.98[ASN][1000 genomes]
rs4612156	0.89[ASN][1000 genomes]
rs4626408	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4645410	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4712561	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4712562	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4712564	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6913323	0.90[ASN][1000 genomes]
rs72657618	1.00[EUR][1000 genomes]
rs9356756	0.81[ASN][1000 genomes]
rs9465895	0.94[CEU][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9465912	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9465923	1.00[CEU][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9465925	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)