SNP Report
Basic Infomation
| Name | rs72657618 dbSNP |
|---|---|
| Location | chr:6,20899274 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10946415 | 0.98[EUR][1000 genomes] |
| rs12194583 | 0.99[EUR][1000 genomes] |
| rs12215519 | 0.81[EUR][1000 genomes] |
| rs4077404 | 0.97[EUR][1000 genomes] |
| rs4626408 | 0.98[EUR][1000 genomes] |
| rs4645410 | 0.91[EUR][1000 genomes] |
| rs4710958 | 0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4712561 | 0.98[EUR][1000 genomes] |
| rs4712562 | 0.99[EUR][1000 genomes] |
| rs4712564 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6918643 | 1.00[EUR][1000 genomes] |
| rs9460577 | 0.90[ASN][1000 genomes] |
| rs9460578 | 0.90[ASN][1000 genomes] |
| rs9465895 | 0.81[EUR][1000 genomes] |
| rs9465912 | 0.86[EUR][1000 genomes] |
| rs9465923 | 0.98[EUR][1000 genomes] |
| rs9465925 | 0.99[EUR][1000 genomes] |
| rs9465934 | 0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014