SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 10)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs4077404	0.83[GIH][hapmap]
rs4712564	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72657618	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72657619	0.81[ASN][1000 genomes]
rs9460577	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9460578	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9465895	0.80[GIH][hapmap]
rs9465923	0.80[GIH][hapmap]
rs9465925	0.86[GIH][hapmap]
rs9465934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
ALDH5A1	SCAN
ODF3L2	SCAN