SNP Report
Basic Infomation
| Name | rs10946424 dbSNP |
|---|---|
| Location | chr:6,20992892 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1004172 | 0.94[EUR][1000 genomes] |
| rs12193382 | 0.95[EUR][1000 genomes] |
| rs12197923 | 0.93[EUR][1000 genomes] |
| rs12215519 | 0.86[ASN][1000 genomes] |
| rs1997685 | 0.92[EUR][1000 genomes] |
| rs4710959 | 0.93[EUR][1000 genomes] |
| rs4712564 | 0.80[EUR][1000 genomes] |
| rs4712570 | 0.93[EUR][1000 genomes] |
| rs4712572 | 0.95[EUR][1000 genomes] |
| rs4712575 | 0.95[EUR][1000 genomes] |
| rs73379534 | 0.96[EUR][1000 genomes] |
| rs7453577 | 0.96[EUR][1000 genomes] |
| rs7738201 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9348452 | 0.95[EUR][1000 genomes] |
| rs9348453 | 0.90[EUR][1000 genomes] |
| rs9350301 | 0.94[EUR][1000 genomes] |
| rs9350302 | 0.94[EUR][1000 genomes] |
| rs9350310 | 0.98[EUR][1000 genomes] |
| rs9356759 | 0.98[EUR][1000 genomes] |
| rs9358382 | 0.94[EUR][1000 genomes] |
| rs9358385 | 0.90[EUR][1000 genomes] |
| rs9368260 | 0.93[EUR][1000 genomes] |
| rs9368261 | 0.92[EUR][1000 genomes] |
| rs9368262 | 0.98[EUR][1000 genomes] |
| rs9368263 | 0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014