SNP Report

Basic Infomation

Name	rs17226450 dbSNP
Location	chr:6,20710309
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10456232	1.00[ASW][hapmap];1.00[CHD][hapmap];0.83[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs10456233	1.00[YRI][hapmap]
rs10484632	1.00[CHD][hapmap]
rs11970626	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12153939	1.00[YRI][hapmap]
rs12198728	0.85[CEU][hapmap];1.00[CHD][hapmap]
rs12200871	1.00[CHD][hapmap]
rs12204865	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs16884021	0.85[CEU][hapmap]
rs16884070	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16884185	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs17226774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17823127	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs17823571	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17824302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17824500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2069013	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs2069014	0.85[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs2206740	0.82[CEU][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2819999	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap]
rs2876583	1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap]
rs4413596	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs4710944	1.00[CHD][hapmap]
rs4710952	1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap]
rs4710955	1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap]
rs62397569	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62397571	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs62397572	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs62397573	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62397574	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62397614	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62397617	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62397618	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62397619	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62397620	0.91[EUR][1000 genomes]
rs62397621	0.86[EUR][1000 genomes]
rs62397622	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62397624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62397646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62397647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62397648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62397650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62397652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6910032	1.00[CHD][hapmap]
rs7749397	1.00[CHD][hapmap]
rs7766346	1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)