SNP Report

Basic Infomation

Name	rs62397647 dbSNP
Location	chr:6,20686852
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11970626	0.88[EUR][1000 genomes]
rs16884021	0.82[EUR][1000 genomes]
rs16884070	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17226450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17226774	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17823127	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs17823571	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17824302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17824500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2069013	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2069014	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2206740	1.00[AFR][1000 genomes]
rs62397569	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62397571	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62397572	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62397573	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62397574	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62397614	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62397617	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62397618	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62397619	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62397620	0.94[EUR][1000 genomes]
rs62397621	0.88[EUR][1000 genomes]
rs62397622	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62397624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62397646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62397648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62397650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62397652	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)