SNP Report
Basic Infomation
| Name | rs11970626 dbSNP |
|---|---|
| Location | chr:6,20700621 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12198728 | 0.85[CEU][hapmap] |
| rs12204865 | 0.85[CEU][hapmap] |
| rs16884021 | 0.87[CEU][hapmap] |
| rs16884070 | 0.88[EUR][1000 genomes] |
| rs17226450 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs17226774 | 0.97[EUR][1000 genomes] |
| rs17823571 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs17824302 | 0.91[EUR][1000 genomes] |
| rs17824500 | 0.97[EUR][1000 genomes] |
| rs2069013 | 0.85[CEU][hapmap] |
| rs2069014 | 0.87[CEU][hapmap] |
| rs2206740 | 0.85[CEU][hapmap] |
| rs62397569 | 0.82[EUR][1000 genomes] |
| rs62397614 | 0.88[EUR][1000 genomes] |
| rs62397617 | 0.88[EUR][1000 genomes] |
| rs62397618 | 0.88[EUR][1000 genomes] |
| rs62397619 | 0.88[EUR][1000 genomes] |
| rs62397620 | 0.88[EUR][1000 genomes] |
| rs62397621 | 0.83[EUR][1000 genomes] |
| rs62397622 | 0.88[EUR][1000 genomes] |
| rs62397624 | 0.91[EUR][1000 genomes] |
| rs62397646 | 0.85[EUR][1000 genomes] |
| rs62397647 | 0.88[EUR][1000 genomes] |
| rs62397648 | 0.97[EUR][1000 genomes] |
| rs62397650 | 0.97[EUR][1000 genomes] |
| rs62397652 | 0.97[EUR][1000 genomes] |
| rs73732740 | 0.85[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014