SNP Report

Basic Infomation

Name	rs10484632 dbSNP
Location	chr:6,20647660
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 59)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10456232	1.00[CHD][hapmap]
rs10484635	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11963217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965473	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970417	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970425	0.85[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs12198728	1.00[CHD][hapmap]
rs12200871	1.00[CHD][hapmap]
rs13190727	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs13190734	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13194407	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13194858	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13203361	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13203450	1.00[CHB][hapmap]
rs13220465	1.00[ASN][1000 genomes]
rs16883935	1.00[CHB][hapmap]
rs16883951	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16884072	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs16884074	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs16884185	1.00[CHD][hapmap]
rs17226450	1.00[CHD][hapmap]
rs17823073	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2069013	1.00[CHD][hapmap]
rs2179552	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2179553	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2819999	1.00[CHD][hapmap]
rs28360636	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34525680	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35255583	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35260725	1.00[ASN][1000 genomes]
rs35392790	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35889049	1.00[ASN][1000 genomes]
rs36045545	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4134945	1.00[CHB][hapmap]
rs4710952	1.00[CHD][hapmap]
rs61613763	1.00[ASN][1000 genomes]
rs62397612	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904566	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6905138	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6913126	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927356	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6932676	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6932876	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933165	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71535526	1.00[ASN][1000 genomes]
rs736425	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs7745175	1.00[ASN][1000 genomes]
rs7749083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs7749464	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7765784	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771052	1.00[CHB][hapmap]
rs7772956	1.00[JPT][hapmap]
rs9460517	1.00[JPT][hapmap]
rs9460541	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9460542	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs981042	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs981043	1.00[CHB][hapmap];1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)