SNP Report
Basic Infomation
| Name | rs11970425 dbSNP |
|---|---|
| Location | chr:6,20666457 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 50)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10484632 | 0.85[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs10484635 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11963217 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs11965473 | 1.00[ASN][1000 genomes] |
| rs11970417 | 1.00[ASN][1000 genomes] |
| rs13190727 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13190734 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs13194407 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13194858 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13203361 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13203450 | 1.00[CHB][hapmap] |
| rs13220465 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16883935 | 1.00[CHB][hapmap] |
| rs16883951 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16884072 | 0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs16884074 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17823073 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2179552 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2179553 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28360636 | 1.00[ASN][1000 genomes] |
| rs34525680 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs35260725 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35392790 | 1.00[ASN][1000 genomes] |
| rs35889049 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36045545 | 1.00[ASN][1000 genomes] |
| rs4134945 | 1.00[CHB][hapmap] |
| rs61613763 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62397612 | 1.00[ASN][1000 genomes] |
| rs6904566 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6905138 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6913126 | 1.00[ASN][1000 genomes] |
| rs6925233 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs6927356 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6932676 | 0.83[ASN][1000 genomes] |
| rs6932876 | 1.00[ASN][1000 genomes] |
| rs6933165 | 1.00[ASN][1000 genomes] |
| rs6933219 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs71535526 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs736425 | 0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7745175 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7749083 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7749464 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7765784 | 1.00[ASN][1000 genomes] |
| rs7771052 | 1.00[CHB][hapmap] |
| rs7772956 | 1.00[JPT][hapmap] |
| rs9460517 | 1.00[JPT][hapmap] |
| rs9460541 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9460542 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs981042 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs981043 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014