SNP Report

Basic Infomation

Name	rs6905138 dbSNP
Location	chr:6,20536356
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 35)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10484632	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10484635	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11963217	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11964635	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970425	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13190727	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13190734	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13194407	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13194858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13199286	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203336	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203361	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13203450	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13203631	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883935	1.00[CHB][hapmap]
rs16883951	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16884072	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16884074	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17823073	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34233572	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34525680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4134945	1.00[CHB][hapmap]
rs6904566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925233	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6927356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933219	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs736425	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7749083	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7771052	1.00[CHB][hapmap]
rs7772956	0.93[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs9460517	0.83[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs9460541	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9460542	1.00[JPT][hapmap]
rs981042	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs981043	1.00[CHB][hapmap];1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
E2F3	Distal transcriptional regulation
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)