SNP Report
Basic Infomation
| Name | rs35255583 dbSNP |
|---|---|
| Location | chr:6,20644893 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10484632 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11963217 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11965473 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11970417 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2179552 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2179553 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs28360636 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs35392790 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs36045545 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs62397612 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6913126 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6925233 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6932676 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6932876 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6933165 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6933219 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7765784 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014