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rVarBase
SNP Report
Basic Infomation
Name
rs9465874  
dbSNP
Location
chr:6,20737354
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10946406
0.84[GIH][hapmap]
rs4510656
0.84[GIH][hapmap]
rs4710944
0.95[GIH][hapmap];0.94[MEX][hapmap];0.86[AMR][1000 genomes]
rs4710945
0.81[CEU][hapmap];0.92[GIH][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs4712538
0.84[AMR][1000 genomes]
rs9465875
1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9465890
0.92[GIH][hapmap];1.00[MEX][hapmap]
rs9465895
0.82[GIH][hapmap]
rSNP related genes
Symbol
Regulation type
CDKAL1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
CST3
SCAN