SNP Report

Basic Infomation

Name	rs4710945 dbSNP
Location	chr:6,20745074
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 47)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10806923	0.86[CHB][hapmap];0.96[CHD][hapmap];0.84[JPT][hapmap]
rs10946405	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10946406	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.90[ASN][1000 genomes]
rs10946415	0.93[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs10946416	0.86[CHB][hapmap]
rs12190376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12194583	0.84[CHB][hapmap]
rs12199271	0.85[ASN][1000 genomes]
rs13214325	0.90[ASN][1000 genomes]
rs2745929	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2819990	0.89[ASN][1000 genomes]
rs34801493	0.90[ASN][1000 genomes]
rs4077404	0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs4351239	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4475313	0.92[ASN][1000 genomes]
rs4510656	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4546483	0.86[CHB][hapmap]
rs4612156	0.93[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs4644038	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4645410	0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs4710944	0.87[GIH][hapmap]
rs4710946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4712539	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4712540	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4712561	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4712562	0.85[CHB][hapmap]
rs57049909	0.81[ASN][1000 genomes]
rs6910215	0.90[ASN][1000 genomes]
rs6910326	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6913323	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7453352	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7738382	0.87[ASW][hapmap]
rs7747724	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7765413	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9356756	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9465874	0.81[CEU][hapmap];0.92[GIH][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs9465875	0.81[CEU][hapmap];0.92[GIH][hapmap];0.82[EUR][1000 genomes]
rs9465877	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9465879	0.92[ASN][1000 genomes]
rs9465880	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9465883	0.90[ASN][1000 genomes]
rs9465888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9465889	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9465890	0.93[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs9465895	0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9465923	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs9465925	0.86[CHB][hapmap];0.84[CHD][hapmap]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)