SNP Report
Basic Infomation
| Name | rs57049909 dbSNP |
|---|---|
| Location | chr:6,20766219 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10806923 | 0.83[ASN][1000 genomes] |
| rs10946405 | 0.90[ASN][1000 genomes] |
| rs10946406 | 0.88[ASN][1000 genomes] |
| rs12190376 | 0.85[ASN][1000 genomes] |
| rs12662176 | 1.00[AFR][1000 genomes] |
| rs13214325 | 0.88[ASN][1000 genomes] |
| rs2745929 | 0.86[ASN][1000 genomes] |
| rs2819990 | 0.83[ASN][1000 genomes] |
| rs34801493 | 0.88[ASN][1000 genomes] |
| rs4351239 | 0.88[ASN][1000 genomes] |
| rs4475313 | 0.86[ASN][1000 genomes] |
| rs4510656 | 0.88[ASN][1000 genomes] |
| rs4644038 | 0.86[ASN][1000 genomes] |
| rs4710945 | 0.81[ASN][1000 genomes] |
| rs4710946 | 0.88[ASN][1000 genomes] |
| rs4712539 | 0.86[ASN][1000 genomes] |
| rs4712540 | 0.88[ASN][1000 genomes] |
| rs60702402 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6910215 | 0.88[ASN][1000 genomes] |
| rs6910326 | 0.88[ASN][1000 genomes] |
| rs72657619 | 1.00[EUR][1000 genomes] |
| rs7453352 | 0.88[ASN][1000 genomes] |
| rs7747724 | 0.86[ASN][1000 genomes] |
| rs7765413 | 0.86[ASN][1000 genomes] |
| rs9350269 | 1.00[AFR][1000 genomes] |
| rs9368217 | 1.00[AFR][1000 genomes] |
| rs9465877 | 0.86[ASN][1000 genomes] |
| rs9465879 | 0.86[ASN][1000 genomes] |
| rs9465880 | 0.88[ASN][1000 genomes] |
| rs9465883 | 0.88[ASN][1000 genomes] |
| rs9465888 | 0.87[ASN][1000 genomes] |
| rs9465889 | 0.88[ASN][1000 genomes] |
| rs9465890 | 0.92[ASN][1000 genomes] |
| rs9465895 | 0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000233848 | RNA binding protein mediated regulation |
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014