SNP Report
Basic Infomation
| Name | rs60702402 dbSNP |
|---|---|
| Location | chr:6,20822436 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10946405 | 0.81[ASN][1000 genomes] |
| rs10946415 | 0.88[ASN][1000 genomes] |
| rs10946416 | 0.80[ASN][1000 genomes] |
| rs12194583 | 0.80[ASN][1000 genomes] |
| rs12662176 | 1.00[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4077404 | 0.88[ASN][1000 genomes] |
| rs4546483 | 0.80[ASN][1000 genomes] |
| rs4612156 | 0.87[ASN][1000 genomes] |
| rs4626408 | 0.80[ASN][1000 genomes] |
| rs4645410 | 0.88[ASN][1000 genomes] |
| rs4712561 | 0.88[ASN][1000 genomes] |
| rs57049909 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6913323 | 0.88[ASN][1000 genomes] |
| rs72657619 | 1.00[EUR][1000 genomes] |
| rs9350269 | 1.00[AFR][1000 genomes] |
| rs9356756 | 0.85[ASN][1000 genomes] |
| rs9368217 | 1.00[AFR][1000 genomes] |
| rs9465895 | 0.83[ASN][1000 genomes] |
| rs9465912 | 0.90[ASN][1000 genomes] |
| rs9465923 | 0.80[ASN][1000 genomes] |
| rs9465925 | 0.80[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014