SNP Report
Basic Infomation
| Name | rs9350309 dbSNP |
|---|---|
| Location | chr:6,20985460 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1004172 | 0.83[CHB][hapmap];0.83[CHD][hapmap] |
| rs12055489 | 1.00[CEU][hapmap] |
| rs1997685 | 0.95[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs4438948 | 1.00[CEU][hapmap] |
| rs4710959 | 0.84[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs4712564 | 0.84[JPT][hapmap] |
| rs4712570 | 0.84[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs4712572 | 0.83[CHB][hapmap];0.83[CHD][hapmap] |
| rs4712575 | 0.82[ASN][1000 genomes] |
| rs73379534 | 0.90[ASN][1000 genomes] |
| rs7453577 | 0.90[ASN][1000 genomes] |
| rs7775523 | 0.86[CHD][hapmap] |
| rs9348452 | 0.83[ASN][1000 genomes] |
| rs9348455 | 1.00[CEU][hapmap] |
| rs9350301 | 0.86[CHD][hapmap];0.80[ASN][1000 genomes] |
| rs9350302 | 0.80[ASN][1000 genomes] |
| rs9350322 | 1.00[CEU][hapmap] |
| rs9356759 | 0.83[ASN][1000 genomes] |
| rs9356763 | 1.00[CEU][hapmap] |
| rs9358383 | 0.81[CHD][hapmap] |
| rs9368260 | 0.89[ASN][1000 genomes] |
| rs9368261 | 0.87[ASN][1000 genomes] |
| rs9368262 | 0.83[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014