SNP Report

Basic Infomation

Name	rs7554511 dbSNP
Location	chr:1,200877562
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 54)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10494828	0.88[CEU][hapmap];0.83[TSI][hapmap];1.00[ASN][1000 genomes]
rs10800746	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10800755	1.00[ASN][1000 genomes]
rs10800756	1.00[ASN][1000 genomes]
rs10920074	0.81[EUR][1000 genomes]
rs11576681	0.80[CEU][hapmap];1.00[ASN][1000 genomes]
rs11580823	1.00[ASN][1000 genomes]
rs11583328	0.80[CEU][hapmap];0.81[TSI][hapmap];1.00[ASN][1000 genomes]
rs11583546	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584383	0.88[CEU][hapmap]
rs11586763	1.00[ASN][1000 genomes]
rs11589573	1.00[ASN][1000 genomes]
rs11589638	0.84[EUR][1000 genomes]
rs12122721	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs12122809	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs12126806	0.88[CEU][hapmap];0.83[TSI][hapmap]
rs12131796	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132298	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132349	0.96[CEU][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140420	1.00[ASN][1000 genomes]
rs12142704	1.00[ASN][1000 genomes]
rs17419032	0.84[CEU][hapmap];0.81[TSI][hapmap];1.00[ASN][1000 genomes]
rs2279943	0.81[CEU][hapmap]
rs2297909	0.91[CEU][hapmap]
rs296520	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs296528	0.94[YRI][hapmap];0.92[AFR][1000 genomes]
rs296529	0.95[AFR][1000 genomes]
rs296530	0.92[AFR][1000 genomes]
rs296543	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs3208703	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs34873729	1.00[ASN][1000 genomes]
rs35730213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs370411	0.80[CEU][hapmap]
rs3767498	1.00[ASN][1000 genomes]
rs3767501	1.00[ASN][1000 genomes]
rs3767502	1.00[ASN][1000 genomes]
rs378672	0.80[CEU][hapmap]
rs3861928	1.00[ASN][1000 genomes]
rs3913893	1.00[ASN][1000 genomes]
rs404339	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs41299637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4915473	1.00[ASN][1000 genomes]
rs511104	0.97[AFR][1000 genomes]
rs55734382	1.00[ASN][1000 genomes]
rs55757739	1.00[ASN][1000 genomes]
rs55838263	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55862304	1.00[ASN][1000 genomes]
rs59655222	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6702590	1.00[ASN][1000 genomes]
rs67602696	1.00[ASN][1000 genomes]
rs72749166	1.00[ASN][1000 genomes]
rs7522462	1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7539693	1.00[ASN][1000 genomes]
rs905634	0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
C1orf106	Proximal transcriptional regulation
C1orf106	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)