SNP Report
Name | rs7554511   dbSNP |
---|---|
Location | chr:1,200877562 |
Allele | C/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10494828 | 0.88[CEU][hapmap];0.83[TSI][hapmap];1.00[ASN][1000 genomes] |
rs10800746 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
rs10800755 | 1.00[ASN][1000 genomes] |
rs10800756 | 1.00[ASN][1000 genomes] |
rs10920074 | 0.81[EUR][1000 genomes] |
rs11576681 | 0.80[CEU][hapmap];1.00[ASN][1000 genomes] |
rs11580823 | 1.00[ASN][1000 genomes] |
rs11583328 | 0.80[CEU][hapmap];0.81[TSI][hapmap];1.00[ASN][1000 genomes] |
rs11583546 | 0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11584383 | 0.88[CEU][hapmap] |
rs11586763 | 1.00[ASN][1000 genomes] |
rs11589573 | 1.00[ASN][1000 genomes] |
rs11589638 | 0.84[EUR][1000 genomes] |
rs12122721 | 0.88[CEU][hapmap];0.81[TSI][hapmap] |
rs12122809 | 0.83[CEU][hapmap];1.00[ASN][1000 genomes] |
rs12126806 | 0.88[CEU][hapmap];0.83[TSI][hapmap] |
rs12131796 | 1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12132298 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12132349 | 0.96[CEU][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12140420 | 1.00[ASN][1000 genomes] |
rs12142704 | 1.00[ASN][1000 genomes] |
rs17419032 | 0.84[CEU][hapmap];0.81[TSI][hapmap];1.00[ASN][1000 genomes] |
rs2279943 | 0.81[CEU][hapmap] |
rs2297909 | 0.91[CEU][hapmap] |
rs296520 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs296528 | 0.94[YRI][hapmap];0.92[AFR][1000 genomes] |
rs296529 | 0.95[AFR][1000 genomes] |
rs296530 | 0.92[AFR][1000 genomes] |
rs296543 | 0.88[CEU][hapmap];0.84[EUR][1000 genomes] |
rs3208703 | 0.87[CEU][hapmap];1.00[ASN][1000 genomes] |
rs34873729 | 1.00[ASN][1000 genomes] |
rs35730213 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs370411 | 0.80[CEU][hapmap] |
rs3767498 | 1.00[ASN][1000 genomes] |
rs3767501 | 1.00[ASN][1000 genomes] |
rs3767502 | 1.00[ASN][1000 genomes] |
rs378672 | 0.80[CEU][hapmap] |
rs3861928 | 1.00[ASN][1000 genomes] |
rs3913893 | 1.00[ASN][1000 genomes] |
rs404339 | 0.88[CEU][hapmap];0.85[EUR][1000 genomes] |
rs41299637 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4915473 | 1.00[ASN][1000 genomes] |
rs511104 | 0.97[AFR][1000 genomes] |
rs55734382 | 1.00[ASN][1000 genomes] |
rs55757739 | 1.00[ASN][1000 genomes] |
rs55838263 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55862304 | 1.00[ASN][1000 genomes] |
rs59655222 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6702590 | 1.00[ASN][1000 genomes] |
rs67602696 | 1.00[ASN][1000 genomes] |
rs72749166 | 1.00[ASN][1000 genomes] |
rs7522462 | 1.00[CEU][hapmap];0.95[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7539693 | 1.00[ASN][1000 genomes] |
rs905634 | 0.82[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
C1orf106 | Proximal transcriptional regulation |
C1orf106 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
NR5A2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014