SNP Report

Basic Infomation

Name	rs404339 dbSNP
Location	chr:1,200886891
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 32)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10494828	0.84[CEU][hapmap]
rs10800746	0.88[CEU][hapmap]
rs10920074	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10920091	0.93[JPT][hapmap]
rs11583546	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs11584383	0.84[CEU][hapmap]
rs11584527	0.90[JPT][hapmap]
rs11589638	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12122721	0.84[CEU][hapmap]
rs12126806	0.84[CEU][hapmap]
rs12131796	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs12132298	0.85[EUR][1000 genomes]
rs12132349	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs12567900	0.91[JPT][hapmap]
rs17419032	0.80[CEU][hapmap]
rs2297908	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2297909	0.87[CEU][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs296520	0.87[EUR][1000 genomes]
rs296543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs296559	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs296560	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs296570	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs3208703	0.84[CEU][hapmap]
rs35730213	0.85[EUR][1000 genomes]
rs370411	0.92[CEU][hapmap]
rs3767496	0.87[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs378672	0.84[CEU][hapmap];0.85[TSI][hapmap]
rs41299637	0.85[EUR][1000 genomes]
rs55838263	0.84[EUR][1000 genomes]
rs59655222	0.85[EUR][1000 genomes]
rs7522462	0.88[CEU][hapmap];0.80[TSI][hapmap];0.87[EUR][1000 genomes]
rs7554511	0.88[CEU][hapmap];0.85[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
MROH3P	Proximal transcriptional regulation
MROH3P	Distal transcriptional regulation
C1orf106	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)