SNP Report
Basic Infomation
| Name | rs296529 dbSNP |
|---|---|
| Location | chr:1,200871876 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12131796 | 0.95[AFR][1000 genomes] |
| rs12132298 | 0.95[AFR][1000 genomes] |
| rs12132349 | 0.95[AFR][1000 genomes] |
| rs184164 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs296526 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs296528 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296530 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs296532 | 0.88[EUR][1000 genomes] |
| rs296533 | 0.88[EUR][1000 genomes] |
| rs296534 | 0.88[EUR][1000 genomes] |
| rs35730213 | 0.95[AFR][1000 genomes] |
| rs41299637 | 0.95[AFR][1000 genomes] |
| rs511104 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs59655222 | 0.95[AFR][1000 genomes] |
| rs7554511 | 0.95[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C1orf106 | Proximal transcriptional regulation |
| C1orf106 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014