SNP Report
Basic Infomation
| Name | rs296533 dbSNP |
|---|---|
| Location | chr:1,200865768 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1389643 | 1.00[JPT][hapmap] |
| rs1389644 | 1.00[JPT][hapmap] |
| rs184164 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2220820 | 1.00[JPT][hapmap] |
| rs2364686 | 1.00[JPT][hapmap] |
| rs296526 | 0.89[EUR][1000 genomes] |
| rs296528 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs296529 | 0.88[EUR][1000 genomes] |
| rs296530 | 0.89[EUR][1000 genomes] |
| rs296532 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs296534 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs511104 | 0.88[EUR][1000 genomes] |
| rs731077 | 1.00[JPT][hapmap] |
| rs7519005 | 1.00[JPT][hapmap] |
| rs7533592 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GPR25 | Distal transcriptional regulation |
| RPL34P6 | Distal transcriptional regulation |
| C1orf106 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| NR5A2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014