SNP Report
Basic Infomation
| Name | rs10800746 dbSNP |
|---|---|
| Location | chr:1,200881392 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10494828 | 0.88[CEU][hapmap] |
| rs11583546 | 0.86[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs11584383 | 0.88[CEU][hapmap] |
| rs12122721 | 0.88[CEU][hapmap] |
| rs12126806 | 0.88[CEU][hapmap] |
| rs12131796 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs12132298 | 0.89[EUR][1000 genomes] |
| rs12132349 | 0.96[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs17419032 | 0.83[CEU][hapmap] |
| rs2297909 | 0.91[CEU][hapmap] |
| rs296520 | 0.90[EUR][1000 genomes] |
| rs296543 | 0.88[CEU][hapmap] |
| rs3208703 | 0.84[CEU][hapmap] |
| rs35730213 | 0.89[EUR][1000 genomes] |
| rs370411 | 0.81[CEU][hapmap] |
| rs404339 | 0.88[CEU][hapmap] |
| rs41299637 | 0.89[EUR][1000 genomes] |
| rs55838263 | 0.88[EUR][1000 genomes] |
| rs59250396 | 0.83[ASN][1000 genomes] |
| rs59655222 | 0.89[EUR][1000 genomes] |
| rs7522462 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs7554511 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs905634 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C1orf106 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014