SNP Report

Basic Infomation

Name	rs2297909 dbSNP
Location	chr:1,200960307
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10494828	0.96[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs10800746	0.91[CEU][hapmap]
rs10920083	0.94[ASN][1000 genomes]
rs10920084	0.98[EUR][1000 genomes]
rs10920087	0.94[ASN][1000 genomes]
rs10920090	0.81[CEU][hapmap]
rs10920091	0.81[CEU][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11576681	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs11580823	0.86[EUR][1000 genomes]
rs11583328	0.87[CEU][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs11583546	0.95[CEU][hapmap]
rs11584383	0.81[ASW][hapmap];0.96[CEU][hapmap];0.92[TSI][hapmap];0.85[YRI][hapmap];0.89[EUR][1000 genomes]
rs11584527	0.90[JPT][hapmap]
rs11586763	0.84[EUR][1000 genomes]
rs11589573	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs12118735	0.84[EUR][1000 genomes]
rs12122721	0.96[CEU][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs12122809	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs12126806	0.96[CEU][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs12131796	0.91[CEU][hapmap]
rs12132349	0.86[CEU][hapmap]
rs12140420	0.88[EUR][1000 genomes]
rs12142704	0.88[EUR][1000 genomes]
rs12567900	0.93[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs17419032	0.92[CEU][hapmap];0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs2221581	0.82[EUR][1000 genomes]
rs2279943	0.88[CEU][hapmap]
rs2297908	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2297913	0.86[ASN][1000 genomes]
rs296543	0.87[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs296559	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs296560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs296563	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs296570	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3208703	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs34873729	0.83[EUR][1000 genomes]
rs3767496	0.92[JPT][hapmap]
rs404339	0.87[CEU][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs55757739	0.87[EUR][1000 genomes]
rs55862304	0.85[EUR][1000 genomes]
rs67602696	0.81[EUR][1000 genomes]
rs72749166	0.87[EUR][1000 genomes]
rs7522462	0.91[CEU][hapmap]
rs7535723	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7539693	0.88[EUR][1000 genomes]
rs7554511	0.91[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
KIF21B	Proximal transcriptional regulation
KIF21B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)