SNP Report
Basic Infomation
| Name | rs2297913 dbSNP |
|---|---|
| Location | chr:1,200942434 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10920083 | 0.95[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10920087 | 0.95[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10920097 | 1.00[EUR][1000 genomes] |
| rs11584527 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12563240 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12567900 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2297908 | 0.90[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2297909 | 0.86[ASN][1000 genomes] |
| rs296559 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs296560 | 0.95[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs296563 | 0.92[ASN][1000 genomes] |
| rs296570 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs34754698 | 1.00[AFR][1000 genomes] |
| rs3767512 | 1.00[AFR][1000 genomes] |
| rs7535723 | 0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIF21B | Proximal transcriptional regulation |
| ASCL5 | Distal transcriptional regulation |
| KIF21B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014