SNP Report
Basic Infomation
| Name | rs12567900 dbSNP |
|---|---|
| Location | chr:1,200962588 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10920083 | 0.95[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10920087 | 0.95[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10920091 | 0.83[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs10920097 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11584527 | 0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12563240 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2297908 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2297909 | 0.93[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs2297913 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs296543 | 0.91[JPT][hapmap] |
| rs296559 | 0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs296560 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs296563 | 0.89[ASN][1000 genomes] |
| rs296570 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3767496 | 1.00[JPT][hapmap] |
| rs404339 | 0.91[JPT][hapmap] |
| rs7535723 | 0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIF21B | Proximal transcriptional regulation |
| KIF21B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014