SNP Report
Basic Infomation
| Name | rs296563 dbSNP |
|---|---|
| Location | chr:1,200944840 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10494828 | 0.84[EUR][1000 genomes] |
| rs10920074 | 0.82[AMR][1000 genomes] |
| rs10920083 | 0.90[ASN][1000 genomes] |
| rs10920084 | 0.94[EUR][1000 genomes] |
| rs10920087 | 0.90[ASN][1000 genomes] |
| rs10920091 | 0.81[ASN][1000 genomes] |
| rs11580823 | 0.82[EUR][1000 genomes] |
| rs11584383 | 0.93[EUR][1000 genomes] |
| rs11586763 | 0.80[EUR][1000 genomes] |
| rs11589573 | 0.83[EUR][1000 genomes] |
| rs12118735 | 0.88[EUR][1000 genomes] |
| rs12122721 | 0.80[EUR][1000 genomes] |
| rs12126806 | 0.82[EUR][1000 genomes] |
| rs12140420 | 0.84[EUR][1000 genomes] |
| rs12142704 | 0.84[EUR][1000 genomes] |
| rs12567900 | 0.89[ASN][1000 genomes] |
| rs17419032 | 0.82[EUR][1000 genomes] |
| rs2297908 | 0.90[ASN][1000 genomes] |
| rs2297909 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2297913 | 0.92[ASN][1000 genomes] |
| rs296559 | 0.92[ASN][1000 genomes] |
| rs296560 | 0.93[ASN][1000 genomes] |
| rs296570 | 0.94[ASN][1000 genomes] |
| rs3208703 | 0.88[EUR][1000 genomes] |
| rs34873729 | 0.87[EUR][1000 genomes] |
| rs55757739 | 0.83[EUR][1000 genomes] |
| rs55862304 | 0.82[EUR][1000 genomes] |
| rs72749166 | 0.83[EUR][1000 genomes] |
| rs7535723 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7539693 | 0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASCL5 | Distal transcriptional regulation |
| KIF21B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014