SNP Report

Basic Infomation

Name	rs10494828 dbSNP
Location	chr:1,200957032
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 50)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10800746	0.88[CEU][hapmap]
rs10800755	1.00[ASN][1000 genomes]
rs10800756	1.00[ASN][1000 genomes]
rs10920084	0.86[EUR][1000 genomes]
rs11576681	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11580823	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11583328	0.92[CEU][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11583546	0.90[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11584383	0.89[ASW][hapmap];1.00[CEU][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11586032	0.84[GIH][hapmap]
rs11586763	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11589573	0.91[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118735	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12122721	1.00[CEU][hapmap];0.97[TSI][hapmap];0.95[EUR][1000 genomes]
rs12122809	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126806	1.00[CEU][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs12131796	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs12132298	1.00[ASN][1000 genomes]
rs12132349	0.83[CEU][hapmap];1.00[ASN][1000 genomes]
rs12140420	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12142704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17419032	0.96[CEU][hapmap];0.92[GIH][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279943	0.85[CEU][hapmap]
rs2297909	0.96[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs296543	0.84[CEU][hapmap]
rs296563	0.84[EUR][1000 genomes]
rs3208703	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34873729	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35730213	1.00[ASN][1000 genomes]
rs3767498	1.00[ASN][1000 genomes]
rs3767501	1.00[ASN][1000 genomes]
rs3767502	1.00[ASN][1000 genomes]
rs3861928	1.00[ASN][1000 genomes]
rs3913893	1.00[ASN][1000 genomes]
rs404339	0.84[CEU][hapmap]
rs41299637	1.00[ASN][1000 genomes]
rs4915473	1.00[ASN][1000 genomes]
rs55734382	1.00[ASN][1000 genomes]
rs55757739	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55838263	1.00[ASN][1000 genomes]
rs55862304	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59655222	1.00[ASN][1000 genomes]
rs59682551	0.95[AFR][1000 genomes]
rs6702590	1.00[ASN][1000 genomes]
rs67602696	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72749166	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7522462	0.88[CEU][hapmap];0.86[TSI][hapmap];1.00[ASN][1000 genomes]
rs7535723	0.88[EUR][1000 genomes]
rs7539693	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554511	0.88[CEU][hapmap];0.83[TSI][hapmap];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
KIF21B	Distal transcriptional regulation
KIF21B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)