SNP Report
Basic Infomation
| Name | rs11580823 dbSNP |
|---|---|
| Location | chr:1,200983489 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 45)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10494828 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10800755 | 1.00[ASN][1000 genomes] |
| rs10800756 | 1.00[ASN][1000 genomes] |
| rs10920084 | 0.84[EUR][1000 genomes] |
| rs11576681 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11583328 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11583546 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11584383 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11586763 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11589573 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12118735 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12122721 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12122809 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12126806 | 0.95[EUR][1000 genomes] |
| rs12131796 | 1.00[ASN][1000 genomes] |
| rs12132298 | 1.00[ASN][1000 genomes] |
| rs12132349 | 1.00[ASN][1000 genomes] |
| rs12140420 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12142704 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17419032 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2297909 | 0.86[EUR][1000 genomes] |
| rs296563 | 0.82[EUR][1000 genomes] |
| rs3208703 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34873729 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35730213 | 1.00[ASN][1000 genomes] |
| rs3767498 | 1.00[ASN][1000 genomes] |
| rs3767501 | 1.00[ASN][1000 genomes] |
| rs3767502 | 1.00[ASN][1000 genomes] |
| rs3861928 | 1.00[ASN][1000 genomes] |
| rs3913893 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs41299637 | 1.00[ASN][1000 genomes] |
| rs4915473 | 1.00[ASN][1000 genomes] |
| rs5010839 | 0.80[EUR][1000 genomes] |
| rs55734382 | 1.00[ASN][1000 genomes] |
| rs55757739 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55838263 | 1.00[ASN][1000 genomes] |
| rs55862304 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59655222 | 1.00[ASN][1000 genomes] |
| rs6702590 | 1.00[ASN][1000 genomes] |
| rs67602696 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72749166 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7522462 | 1.00[ASN][1000 genomes] |
| rs7535723 | 0.86[EUR][1000 genomes] |
| rs7539693 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7554511 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIF21B | Distal transcriptional regulation |
| ENSG00000229191 | Distal transcriptional regulation |
| KIF21B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014