SNP Report

Basic Infomation

Name	rs3861928 dbSNP
Location	chr:1,201020574
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 38)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10494828	1.00[ASN][1000 genomes]
rs10800755	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10800756	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11576681	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11580823	1.00[ASN][1000 genomes]
rs11583328	0.82[ASW][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11583546	1.00[ASN][1000 genomes]
rs11586763	1.00[ASN][1000 genomes]
rs11589573	1.00[ASN][1000 genomes]
rs12122809	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12131796	1.00[ASN][1000 genomes]
rs12132298	1.00[ASN][1000 genomes]
rs12132349	1.00[ASN][1000 genomes]
rs12140420	1.00[ASN][1000 genomes]
rs12142704	1.00[ASN][1000 genomes]
rs16847603	1.00[YRI][hapmap]
rs17419032	1.00[ASN][1000 genomes]
rs3208703	1.00[ASN][1000 genomes]
rs34873729	1.00[ASN][1000 genomes]
rs35730213	1.00[ASN][1000 genomes]
rs3767498	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767501	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3767502	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818873	0.82[CEU][hapmap];0.84[MEX][hapmap]
rs3913893	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41299637	1.00[ASN][1000 genomes]
rs4915473	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs55734382	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55757739	1.00[ASN][1000 genomes]
rs55838263	1.00[ASN][1000 genomes]
rs55862304	1.00[ASN][1000 genomes]
rs59655222	1.00[ASN][1000 genomes]
rs6702590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67602696	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72749166	1.00[ASN][1000 genomes]
rs7522462	1.00[ASN][1000 genomes]
rs7539693	1.00[ASN][1000 genomes]
rs7554511	1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CACNA1S	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)