SNP Report
Name | rs11584383   dbSNP |
---|---|
Location | chr:1,200935866 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10494828 | 0.89[ASW][hapmap];1.00[CEU][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs10800746 | 0.88[CEU][hapmap] |
rs10920084 | 0.87[EUR][1000 genomes] |
rs11576681 | 0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs11580823 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs11583328 | 0.92[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs11583546 | 0.90[CEU][hapmap];0.83[EUR][1000 genomes] |
rs11586763 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs11589573 | 0.91[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs12118735 | 0.97[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs12122721 | 1.00[CEU][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes] |
rs12122809 | 0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs12126806 | 1.00[CEU][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes] |
rs12131796 | 0.87[CEU][hapmap] |
rs12132349 | 0.83[CEU][hapmap] |
rs12140420 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs12142704 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs17419032 | 0.96[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2279943 | 0.85[CEU][hapmap] |
rs2297909 | 0.81[ASW][hapmap];0.96[CEU][hapmap];0.92[TSI][hapmap];0.85[YRI][hapmap];0.89[EUR][1000 genomes] |
rs296520 | 1.00[ASN][1000 genomes] |
rs296543 | 0.84[CEU][hapmap] |
rs296563 | 0.93[EUR][1000 genomes] |
rs3208703 | 1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs34873729 | 0.98[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs3861929 | 1.00[ASN][1000 genomes] |
rs404339 | 0.84[CEU][hapmap] |
rs55757739 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs55862304 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs67602696 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs72749166 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs7522462 | 0.88[CEU][hapmap] |
rs7535723 | 0.89[EUR][1000 genomes] |
rs7539693 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs7554511 | 0.88[CEU][hapmap] |
Symbol | Regulation type |
---|---|
CACNA1S | Distal transcriptional regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
NR5A2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014