SNP Report

Basic Infomation

Name	rs11584383 dbSNP
Location	chr:1,200935866
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 35)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10494828	0.89[ASW][hapmap];1.00[CEU][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10800746	0.88[CEU][hapmap]
rs10920084	0.87[EUR][1000 genomes]
rs11576681	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11580823	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11583328	0.92[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11583546	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs11586763	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11589573	0.91[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12118735	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12122721	1.00[CEU][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs12122809	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12126806	1.00[CEU][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs12131796	0.87[CEU][hapmap]
rs12132349	0.83[CEU][hapmap]
rs12140420	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12142704	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17419032	0.96[CEU][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2279943	0.85[CEU][hapmap]
rs2297909	0.81[ASW][hapmap];0.96[CEU][hapmap];0.92[TSI][hapmap];0.85[YRI][hapmap];0.89[EUR][1000 genomes]
rs296520	1.00[ASN][1000 genomes]
rs296543	0.84[CEU][hapmap]
rs296563	0.93[EUR][1000 genomes]
rs3208703	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34873729	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3861929	1.00[ASN][1000 genomes]
rs404339	0.84[CEU][hapmap]
rs55757739	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55862304	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67602696	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72749166	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7522462	0.88[CEU][hapmap]
rs7535723	0.89[EUR][1000 genomes]
rs7539693	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7554511	0.88[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
CACNA1S	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)