SNP Report
Name | rs296570   dbSNP |
---|---|
Location | chr:1,200941549 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10920074 | 0.80[ASN][1000 genomes] |
rs10920083 | 0.95[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs10920087 | 0.95[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs10920091 | 0.93[JPT][hapmap];0.80[ASN][1000 genomes] |
rs10920097 | 1.00[EUR][1000 genomes] |
rs11584527 | 0.90[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12563240 | 0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12567900 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2297908 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs2297909 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs2297913 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs296543 | 1.00[JPT][hapmap] |
rs296559 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs296560 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs296563 | 0.94[ASN][1000 genomes] |
rs3767496 | 0.93[JPT][hapmap] |
rs404339 | 0.81[CHB][hapmap];1.00[JPT][hapmap] |
rs7535723 | 0.86[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
KIF21B | Proximal transcriptional regulation |
ENSG00000229821 | Distal transcriptional regulation |
CACNA1S | Distal transcriptional regulation |
KIF21B | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014